Wildlife@Home

A Push for UAV Imagery Analysis

We're making a push to analyze recent UAV imagery taken from the Hudson Bay! Help us find birds, bears and caribou in our images collected from an unmanned aircraft (aka. Drone) in Northern Manitoba. The wildlife found in the images will be used to create training datasets for us to automate post-processing of large datasets from aerial imagery.

You can help us by reviewing images for the UAS Estimating Snow Geese project.

Welcome to Wildlife@Home

Wildlife@Home is a joint effort from University of North Dakota's Department of Computer Science and Department of Biology, aimed at analyzing video gathered from various cameras recording wildlife. Currently the project is looking at video of sharp-tailed grouse, Tympanuchus phasianellus to examine their nesting habits and ecology. The nest cameras have been set up up both near western North Dakota's oil fields and also within protected state lands. We recently have also begun studying two federally protected species, interior least terns, Sternula antillarum, and piping plovers, Charadruis melodus.

Wildlife@Home Goals

We hope that your participation will help us determine the impact of the oil development on the sharp-tailed grouse, and better understand the behaviors of least terns and piping plovers to aid in their conservation, as well as provide some interesting video for everyone to watch and discuss.

Each spring we capture hens on the lek or dancing grounds where males display for females. We fit hens with a necklace-style radio transmitter that emits a unique radio frequency which we can use to relocate the bird and find her nest.

We track grouse using radio telemetry receivers and various types of antennas such as this handheld antenna and receiver. Photo courtesy of Chris Felege.

We track grouse using radio telemetry receivers and various type so antennas such as this truck mounted antenna. Photo courtesy of Anna Mattson.

Once we find a nest, we install a miniature surveillance camera near the nest.

Nest cameras are powered by cable, from about 75 feet away with a 12 volt battery and a waterproof box housing a DVR that will record to SD cards.

A sharp-tailed grouse nest.

Hens will incubate a nest for about 23 days unless a predator finds and destroys the nest. This is a snapshot from our nest cameras of hen incubating her nest.

Sharp-tailed grouse chicks hatching.

Various predators such as this Swainson’s Hawk will attack the hen while she is sitting on the nest. This image is from one of our nest cameras.

Ground predators, such as this American Badger, will destroy the nest.

After the peak of hatch, we follow hens with broods via radio signals. Once the chicks are about a month old, we will relocate the brood and catch them in big net during the night. Chicks are then fitted with their own necklace-style radio transmitters so we monitor their survival and reproduction over the next year.

This image found in the collected video shows a lightning crash behind a piping plover incubating a nest on the Missouri River in North Dakota.

This image found in the collected video shows a piping plover chick walking across the video screen with an adult brooding the remaining chicks on the nest in the background.

The leg bands used by wildlife biologists for bird identification are clearly visible on the flying adult piping plover.

A tern chick yawns in front of the camera while the adult tern incubates the remaining egg on the nest. This image was found in the collected video.

Interior least terns exhibit biparental investment in their nests. This image found in the collected video shows a nest exchange event between two flying tern parents.

An adult tern feeds a fish to a tern incubating a nest. This image was found in collected video.

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Charles Dennett
60ish UNIX/Linux System Admin. In a previous life I was a chemical engineer before finding computers were much more fun. Run a Linux server at home...

News

[all] new work

Hi Everyone!

Sorry about lots of delays in work generation but we've finally started up some new runs. Things have been pretty busy getting settled in here at RIT. We have some interesting work in the pipleline so we're hoping to have a new application out sometime this semester.

cheers,
--Travis

Travis Desell on Wednesday, September 18th
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[all] status update

Hi Everyone!

Sorry for a lot of silence on our end -- things have been quite hectic this summer! I accepted a new position and now am at Rochester Institute of Technology and busily getting a new lab set up (and having some students migrate along with me).

I'm going to let some of the work units clear out of the system and set up some new runs which should help fix some of the issues you've been seeing with bad workunits. In the longer term, I've started work on an updated binary which should also allow for the use of GPUs, which should hopefully allow the runs to scale a bit better without running into these problems.

I'll be keeping you posted as that comes along, but right now we're all just trying to get settled in a new place! Thanks again for all your support. The results coming in are definitely interesting ones!

Travis Desell on Saturday, August 29th
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[wildlife] new runs up and going

Hi All,

I've started up some new runs. These are using a different, larger, dataset, so let me know if you see any issues with them.

thanks!

Travis Desell on Thursday, May 17th
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[all] account manager issues update

Hi All,

It looks like the "team" table in the database had become corrupted and crashed. I repaired the database and it looks like all is working and I'm not seeing any errors on my end. Let me know if this fixed things for you.

cheers,
--Travis

Travis Desell on Saturday, May 26th
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[all] account manager issues

Hi Everyone,

I've been getting reports of account manager issues. Could anyone provide screenshots so I can get a better idea of what may be going on?

We haven't changed anything server side, was there a recent account manager upgrade that might have broken things? I'll do some server side BOINC code updates tonight to see if that fixes things.

Please let me know if you have any more information about issues you may be seeing so I can help track down the problem.

thanks!
--Travis

Travis Desell on Wednesday, May 2nd
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[all] disk issues on server

Looks like we're experiencing some kind of disk issue on the server. I've submitted a support ticket but in the mean time had to shut down the daemons. I hope we have this back up and running shortly.

Travis Desell on Thursday, May 3rd
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[all] server issues

Looks like we're experiencing some issues server side where the file_deleter daemon isn't working right. I've cleaned up a little space and am running things to fix workunit/resuilt states in the database so the file deleter does it's job. Hoping to have things fixed by the morning but in the meantime things will be down while the cleanup is happening.

Travis Desell on Wednesday, May 16th
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[wildlife] new searches started

Hi Everyone -- got some really interesting results from the last round of searches and we submitted a publication on them last week. Will get a copy out to you soon once we find out if it was published! I've started up a new batch of searches so let me know if you have any issues with these.

Travis Desell on Tuesday, March 13th
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[all] data export issues?

Are you still experiencing data export issues? I know our IT staff was having some problems with hardware and the recent migration of where the virtual machine for citizen science grid is being housed. It looks like everything is running on my end but I just wanted to double check with everyone in case some export process got lost in the transition.

Travis Desell on Sunday, April 22nd
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[wildlife] more maintenance issues

I apologize for slow loading on the flights this morning. Our IT staff has been doing some things which I think resulted in this. Looks like things are back up and going thankfully. If I hear any more I'll let you know.

Travis Desell on Monday, May 21st
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Active Projects

Feel free to scroll through our image gallery above to get a better idea of what is going on with the project and see the field biologists in action, talk to us on the message boards, or watch videos about the project on our Google+ YouTube Channel. The following projects are actively being worked on by these Wildlife@Home team members:

Alicia Andes - Refined Monitoring Techniques to Understand Least Tern and Piping Plover Nest Dynamics
Paul Burr - Sharp-tailed Grouse Nest Predation Relative to Gas and Oil Development in North Dakota
Rebecca Eckroad - Nest Cameras and Citizen Science: Implications for evaluating Sharp-tailed Grouse Nesting Ecology
Kyle Goehner - Automated Wildlife Detection in Uncontrolled Environments

Contact Information

Please email any questions or suggestions to Travis Desell, or feel free to post a message in our forums.

The Wildlife@Home team includes:

Travis Desell, Assistant Professor of Computer Science, University of North Dakota
Susan Ellis-Felege, Assistant Professor of Biology, University of North Dakota
Chris Felege, Educational Outreach Coordinator, Instructor of Biology, University of North Dakota
Alicia Andes, Graduate Research Assistant in Biology, University of North Dakota
Connor Bowley, Graduate Research Assistant in Computer Science, University of North Dakota
Nickolas Conrad, Undergraduate Research Assistant in Biology, University of North Dakota
Kyle Goehner, Graduate Research Assistant in Computer Science, University of North Dakota
Marshall Mattingly III, Graduate Research Assistant in Computer Science, University of North Dakota
John Palarski, Undergraduate Research Assistant in Biology, University of North Dakota
Lindsey Wingate, Undergraduate Research Assistant in Computer Science, University of North Dakota

With agency support from:

Kaylan Carrlson, Manager of Conservation Planning, Ducks Unlimited.
Tanner Gue, Conservation Specialist, Ducks Unlimited.
Aaron Robinson, North Dakota Game and Fish.
Terry Shaffer, U.S.G.S. Northern Prairie Wildlife Research Center.
Mark Sherfy, U.S.G.S. Northern Prairie Wildlife Research Center.

With previous support from:

Robert Bergman, Graduate Research Assistant in Computer Science, University of North Dakota
Paul Burr, Graduate Research Assistant in Biology, University of North Dakota
Benjamin Carpenter, Undergraduate Research Assistant in Compute Science, University of North Dakota
Becca Eckroad, Undergraduate Research Assistant in Biology, University of North Dakota
Jaeden Lovin, Undergraduate Research Assistant in Compute Science, University of North Dakota
Adam Pachl, Undergraduate Research Assistant in Biology, University of North Dakota
Julia Johnson, Undergraduate Research Assistant in Biology, University of North Dakota
Nitin Karodiya, Graduate Research Assistant in Computer Science, University of North Dakota
Eric Kjeldergaard, Graduate Research Assistant in Computer Science, University of North Dakota
Leila Mohsenian, Undergraduate Research Assistant in Biology, University of North Dakota
Kelly Sagen, Undergraduate Research Assistant in Biology, University of North Dakota
Rebecca VanderClute, Undergraduate Research Assistant in Computer Science, University of North Dakota

Publications

All publications, talks and posters about DNA@Home can be viewed on the Citizen Science Grid's publications page.

Support

Wildlife@Home is currently being supported by NSF award no. 1319700 through the Division of Intelligent Information Systems's Information Integration and Informatics (III) program.

Wildlife@Home is collaborating with Ducks Unlimited on a project invovling blue winged teal.

Wildlife@Home has been generously supported by a collaborative research award and new faculty SEED grant from UND's Office of Research Development and Compliance. The project's video streaming server is hosted by UND's Computational Research Center and the volunteer computing server is hosted by UND's Scientific Computing Center.

North Dakota Game and Fish has provided financial support for field logistics to collect sharp-tailed grouse videos.

USGS has provided financial support for camera equipment, video storage, and field assistance to collect data for the piping plover and interior least tern.

Wildlife@Home is in part powered by the Berkeley Open Infrastructure for Network Computing (BOINC).