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Travis Desell
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Message 3271 - Posted: 9 Sep 2014, 2:07:01 UTC

I've sent out a new batch of work units which should (hopefully) fix the validation problem the other ones were having. Let me know how these are running. Feel free to cancel anything starting with 'test_hg19_1_...'.

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Message 3274 - Posted: 9 Sep 2014, 3:49:46 UTC - in response to Message 3271.

I've sent out a new batch of work units which should (hopefully) fix the validation problem the other ones were having. Let me know how these are running. Feel free to cancel anything starting with 'test_hg19_1_...'.


hmmmm...
I've manually aborted around 300 of the test_hg19_1_*** WU's but can't seem to get any hg19_2's. Is there any other way to clear these out? (It shows thousands more "ready to send")

Travis Desell
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Message 3275 - Posted: 9 Sep 2014, 3:54:10 UTC - in response to Message 3274.

I've sent out a new batch of work units which should (hopefully) fix the validation problem the other ones were having. Let me know how these are running. Feel free to cancel anything starting with 'test_hg19_1_...'.


hmmmm...
I've manually aborted around 300 of the test_hg19_1_*** WU's but can't seem to get any hg19_2's. Is there any other way to clear these out? (It shows thousands more "ready to send")


Going to delete them from the database.

Travis Desell
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Message 3276 - Posted: 9 Sep 2014, 3:55:46 UTC - in response to Message 3275.

All the test_hg19_1_* should be cleared out now.

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Message 3277 - Posted: 9 Sep 2014, 3:56:28 UTC - in response to Message 3275.

That worked.. Thanks. getting the hg19_2's now

Travis Desell
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Message 3278 - Posted: 9 Sep 2014, 4:03:37 UTC - in response to Message 3277.

That worked.. Thanks. getting the hg19_2's now


Nice! Hope they work this time around. If not i might need to make some tweaks to the application.

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Message 3279 - Posted: 9 Sep 2014, 5:22:16 UTC
Last modified: 9 Sep 2014, 5:51:08 UTC

Hi Travis.

Pity about the error's, I was out most of the day so I didn't see the problem until it was to late to abort them.

Anyway my two rigs did the first lot of them between 1hr 17min & 1hr, 26min, hope this batch runs better.

Edit / The first 5 of the 19_2 tasks have returned & waiting on the other copy to return to see if they are valid, they took 1hr, 16min on my i7 2700k all uploaded result files are 4.7MB's.
____________

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Message 3280 - Posted: 9 Sep 2014, 5:53:05 UTC - in response to Message 3278.

.... Hope they work this time around. If not i might need to make some tweaks to the application.


I'm getting errors on the hg19_2's also.
The stderr looks completely different... but still huge...and I don't see that it "finalizes".

http://volunteer.cs.und.edu/csg/result.php?resultid=106324
have a look at that one.

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Message 3281 - Posted: 9 Sep 2014, 7:47:17 UTC

Hi Travis.

The few of my gibbs_test_hg19_2 tasks that have gone through the validator are marked as error's, so I've aborted the rest.

I'll wait for some new one's tomorrow.
____________

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Message 3282 - Posted: 9 Sep 2014, 7:53:23 UTC

Until now not a single test_hg19_2 passed the tests. Set to nnt for a while.

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Message 3283 - Posted: 9 Sep 2014, 8:06:06 UTC

The validate horror again, stderr seems to be unfinished. Set NNT and current tasks suspended.

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Message 3284 - Posted: 9 Sep 2014, 8:25:16 UTC - in response to Message 3280.

You can replace this:

created sequence '> 'RNF5:32146161 chr6 32145661 32146661' with max sites = '4' and nucleotides.size() = '1000'

by this one:
seq. '> 'RNF5:32146161 chr6 32145661 32146661' m.s. = '4' n.s. = '1000'

So you can leave room for real output data.

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Message 3285 - Posted: 9 Sep 2014, 11:12:58 UTC

10 validation errors and counting......
Have set project to NNT for the time being.


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Message boards : News : new set of work units 'test_hg19_2_...'