seems to go fine ... took 16 minutes, 26 seconds run time
stderr report looks "Normal" , I guess
<stderr_txt>
parsed argument '--motifs' successfully: forward,6 reverse,6 forward,6 reverse,6 forward,6 reverse,6
parsed argument '--enable_shifting' successfully: 2 5
parsed argument '--sequence_file' successfully: sequences.txt
parsed argument '--burn_in_period' successfully: 0
parsed argument '--sample_period' successfully: 10000
parsed argument '--max_sites' successfully: 7
parsed argument '--seed' successfully: 982906996
parsed argument '--print_best_sites' successfully: 0.1
parsed argument '--checkpoint_frequency' successfully: 10000
parsed argument '--blocks' successfully: 0.1 0.128571 0.128571 0.128571 0.128571 0.128571 0.128571 0.128571
reading from file input stream: ../../projects/csgrid.org_csg/wgEncodeOpenChromChipMcf7Pol2SerumstimRawDataRep1_deduplicated_snail_100_no_repeats.fa
Not using phylogeny.
background probabilities:
A:0.173482
C:0.326518
G:0.326518
T:0.173482
creating model from 'forward,6'
type_string: forward, motif_width: 6
creating model from 'reverse,6'
type_string: reverse, motif_width: 6
creating model from 'forward,6'
type_string: forward, motif_width: 6
creating model from 'reverse,6'
type_string: reverse, motif_width: 6
creating model from 'forward,6'
type_string: forward, motif_width: 6
creating model from 'reverse,6'
type_string: reverse, motif_width: 6
not starting from checkpoint
100 sequences with 100065 total base pairs.
doing walk: 0
seeding: 982906996
sampling initial sites uniform random
Zeroing accumulated samples.
Zeroing counts for motif models.
Incrementing intial counts for motifs.
burn in period: 0, sample period: 10000
17:06:10 (2348): called boinc_finish
</stderr_txt> |