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Message boards : News : [dna] updated 64 bit linux to 0.50

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Travis Desell
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Message 4780 - Posted: 31 Oct 2014, 16:09:44 UTC

Is this one any better?

GlennG
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Message 4781 - Posted: 31 Oct 2014, 16:20:47 UTC - in response to Message 4780.

Looking good.
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Travis Desell
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Message 4782 - Posted: 31 Oct 2014, 16:21:06 UTC - in response to Message 4781.

Looking good.


Woo! Success!

P . P . L .
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Message 4792 - Posted: 4 Nov 2014, 2:22:06 UTC

Hi Travis.

Just saw this one marked as an error, result text looks O.K.?

It was one of the long ones as well.

Completed, marked as invalid

gibbs_test_hg19_1000fa_5_728_0_0

http://volunteer.cs.und.edu/csg/workunit.php?wuid=247898

DNA@Home Gibbs Sampler v0.50
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Travis Desell
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Message 4797 - Posted: 4 Nov 2014, 17:16:12 UTC - in response to Message 4792.

Hi Travis.

Just saw this one marked as an error, result text looks O.K.?

It was one of the long ones as well.

Completed, marked as invalid

gibbs_test_hg19_1000fa_5_728_0_0

http://volunteer.cs.und.edu/csg/workunit.php?wuid=247898

DNA@Home Gibbs Sampler v0.50


Crap, it looks like my updates did not fix the checkpointing issue. I'll look into this and see if I can come up with a fix.

Profile Conan
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Message 4798 - Posted: 4 Nov 2014, 21:46:19 UTC

Is there any chance of getting this app version to be as fast as the 0.44 to 0.46 versions?

I have not had any problems running any of the application versions you have produced (I am running Fedora 16 64 bit).
When you statically linked with versions 0.44 to 0.46 the speed up was excellent on the longer work units (when run times of 4,600 seconds dropping to 3,600 seconds, so 1,000 seconds faster).
The apps run longer now than back with versions 0.42 to 0.47, so the speed up could be even better.

I was wondering what the issue was the other people were having, if it is missing libraries I suppose they can be installed?

Just thinking out loud.

Thanks
Conan
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Message boards : News : [dna] updated 64 bit linux to 0.50